Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs6935398 | chr6:45262427 | G/A | 8.99E-5 | 175 | 16.37 | 15.93 | 12.2 | KM Plot |
| PAAD | rs6947744 | chr7:102959280 | C/A | 5.11E-10 | 177 | 4.1 | 12.5 | 16.28 | KM Plot |
| PAAD | rs6965578 | chr7:6164533 | C/T | 0 | 177 | 15.33 | 15.77 | 1.03 | KM Plot |
| PAAD | rs698794 | chr2:44686585 | T/C | 0.000106 | 172 | 15.48 | 16.82 | 5.55 | KM Plot |
| PAAD | rs698805 | chr2:44701129 | A/G | 8.0E-5 | 178 | 15.57 | 15.4 | 5.55 | KM Plot |
| PAAD | rs7003839 | chr8:1817314 | G/C | 1.67E-5 | 174 | 16.37 | 12.93 | 6.02 | KM Plot |
| PAAD | rs7003969 | chr8:1817367 | G/A | 1.74E-5 | 173 | 16.27 | 13.03 | 7.77 | KM Plot |
| PAAD | rs705477 | chr10:3582161 | A/G | 0.000126 | 175 | 16.17 | 13.1 | 15.85 | KM Plot |
| PAAD | rs7083979 | chr10:2381144 | A/T | 0 | 172 | 0.4 | 14.85 | 15.57 | KM Plot |
| PAAD | rs7087600 | chr10:2381135 | T/C | 0 | 172 | 0.4 | 14.85 | 15.57 | KM Plot |
| PAAD | rs7088068 | chr10:2373541 | C/G | 0 | 171 | 0.4 | 13.53 | 15.9 | KM Plot |
| PAAD | rs7089055 | chr10:2368260 | C/A | 0 | 174 | 0.4 | 12.7 | 16.07 | KM Plot |
| PAAD | rs7092929 | chr10:3538794 | A/C | 3.43E-5 | 175 | 16.07 | 12.63 | 16.1 | KM Plot |
| PAAD | rs7097515 | chr10:3539690 | A/G | 3.7E-5 | 174 | 16.12 | 12.63 | 16.1 | KM Plot |
| PAAD | rs7102041 | chr11:12170617 | A/C | 9.72E-8 | 178 | 3.17 | 15.6 | 15.53 | KM Plot |